Introduction to Mass Spectrometry
-- Interpretation
Here are a list of steps to follow when
interpreting a mass spectrum. This simplified list will help you
to interpret many spectra, however there are other mechanisms of fragmentation
which cannot be covered in this brief tutorial.
Steps to interpret a mass
spectrum:
1. Look for the molecular ion peak.
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This peak (if it appears) will be the highest
mass peak in the spectrum, except for isotope peaks.
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Nominal MW (meaning=rounded off) will be an
even number for compounds containing only C, H, O, S, Si.
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Nominal MW will be an odd number if the compound
also contains an odd number of N (1,3,...).
2. Try to calculate the molecular formula:
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The isotope peaks can be very useful, and
are best explained with an example.
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Carbon 12 has an isotope, carbon 13.
Their abundances are 12C=100%, 13C=1.1%. This
means that for every 100 (12)C atoms there are 1.1 (13)C
atoms.
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If a compound contains 6 carbons, then each
atom has a 1.1% abundance of (13)C.
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Therefore, if the molecular ion peak is 100%,
then the isotope peak (1 mass unit higher) would be 6x1.1%=6.6%.
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If the molecular ion peak is not 100% then
you can calculate the relative abundance of the isotope peak to the ion
peak. For example, if the molecular ion peak were 34% and the isotope
peak 2.3%: (2.3/34)x100 = 6.8%. 6.8% is the relative abundance
of the isotope peak to the ion peak. Next, divide the relative abundance
by the isotope abundance: 6.8/1.1=6 carbons.
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Follow this order when looking for information
provided by isotopes: (A simplified table of isotopes is provided
in the introduction, more detailed tables can be found in chemistry texts.)
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Look for A+2 elements: O, Si, S, Cl,
Br
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Look for A+1 elements: C, N
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"A" elements: H, F, P, I
3. Calculate the total number of rings
plus double bonds:
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For the molecular formula: CxHyNzOn
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rings + double bonds = x - (1/2)y + (1/2)z
+ 1
4. Postulate the molecular structure
consistent with abundance and m/z of fragments.
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More information on specific fragmentation
can be found in the quiz for each functional group.
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